AnnData object with n_obs × n_vars = 27925 × 14582
obs: 'sample_id', 'run_id', 'probe_barcode_ids', 'subject', 'line', 'specimen', 'stage', 'condition', 'notes', 'seqRun', 'original_name', 'project', 'who', 'SC_derivation', 'micoplasma', 'mosaic', 'genSite', 'n_genes_by_counts', 'log1p_n_genes_by_counts', 'total_counts', 'log1p_total_counts', 'total_counts_mito', 'log1p_total_counts_mito', 'pct_counts_mito', 'total_counts_ribo', 'log1p_total_counts_ribo', 'pct_counts_ribo', 'gene_UMI_ratio', 'log1p_gene_UMI_ratio', 'scDblFinder_score', 'scDblFinder_class', 'n_counts', 'n_genes', 'leiden', 'score_pluripotency', 'score_mesoderm', 'score_PS', 'score_EM', 'score_AM', 'score_Endo', 'score_Epi', 'score_HEP', 'score_NM', 'score_ExM', 'score_Ery', 'score_EAE', 'score_Amnion_LC', 'score_AxM', 'score_Amnion', 'score_NNE', 'score_PGC', 'score_hPGCLCs', 'score_DE1', 'score_DE2', 'score_Hypoblast', 'score_YS', 'score_EMPs', 'score_Endothelium', 'score_Myeloid_Progenitors', 'score_Megakaryocyte_Erythroid_progenitors', 'CellTypes'
var: 'n_cells', 'mito', 'ribo', 'n_cells_by_counts', 'mean_counts', 'log1p_mean_counts', 'pct_dropout_by_counts', 'total_counts', 'log1p_total_counts', 'highly_variable', 'means', 'dispersions', 'dispersions_norm', 'highly_variable_nbatches', 'highly_variable_intersection', 'triku_distance', 'triku_distance_uncorrected', 'triku_highly_variable'
uns: 'CellTypes_colors', 'dendrogram_CellTypes', 'dendrogram_leiden', 'dendrogram_specimen', 'hvg', 'leiden', 'leiden_colors', 'log1p', 'neighbors', 'pca', 'rank_genes_groups', 'run_id_colors', 'sample_id_colors', 'specimen_colors', 'stage_colors', 'triku_params', 'umap'
obsm: 'X_pca', 'X_pca_harmony', 'X_umap'
varm: 'PCs'
layers: 'raw'
obsp: 'connectivities', 'distances'